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  "Package": "ScanCentricPeakCharacterization",
  "Title": "Functionality for Characterizing Peaks in Mass Spectrometry in a\nScan-Centric Manner",
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  "Date": "2024-03-28",
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  "_exports": [
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    "add_scan_info",
    "add_to_zip",
    "characterize_peaks",
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    "check_zip_file",
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    "create_frequency_regions",
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    "default_offset_predict_function",
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    "filter_scans_builtin",
    "find_signal_regions",
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    "meta_export_json",
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    "SCPeakRegions",
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    "set_internal_map",
    "show_progress",
    "single_pass_normalization",
    "split_region_by_peaks",
    "ssr",
    "transform_residuals",
    "zip_list_contents"
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    {
      "page": "dot-get_scan_polarity",
      "title": "get_scan_mode",
      "topics": [
        ".get_scan_polarity"
      ]
    },
    {
      "page": "dot-remove_attrs",
      "title": "remove attributes",
      "topics": [
        ".remove_attrs"
      ]
    },
    {
      "page": "dot-to_data_frame",
      "title": "transform to data frame",
      "topics": [
        ".to_data_frame"
      ]
    },
    {
      "page": "add_scan_info",
      "title": "add scan level info",
      "topics": [
        "add_scan_info"
      ]
    },
    {
      "page": "add_to_zip",
      "title": "add to zip file",
      "topics": [
        "add_to_zip"
      ]
    },
    {
      "page": "area_sum_points",
      "title": "area sum",
      "topics": [
        "area_sum_points"
      ]
    },
    {
      "page": "characterize_peaks",
      "title": "characterize peaks from points and picked peaks",
      "topics": [
        "characterize_peaks"
      ]
    },
    {
      "page": "check_frequency_r2",
      "title": "check r2",
      "topics": [
        "check_frequency_r2"
      ]
    },
    {
      "page": "check_ranges_convert_to_regions",
      "title": "frequency points to frequency regions",
      "topics": [
        "check_ranges_convert_to_regions"
      ]
    },
    {
      "page": "check_zip_file",
      "title": "check zip file",
      "topics": [
        "check_zip_file"
      ]
    },
    {
      "page": "choose_frequency_model_builtin",
      "title": "default single model",
      "topics": [
        "choose_frequency_model_builtin"
      ]
    },
    {
      "page": "convert_mz_frequency",
      "title": "Convert M/Z to Frequency",
      "topics": [
        "convert_mz_frequency"
      ]
    },
    {
      "page": "correct_mean",
      "title": "correct peak mean",
      "topics": [
        "correct_mean"
      ]
    },
    {
      "page": "correct_peak",
      "title": "correct peak sd and mean",
      "topics": [
        "correct_peak"
      ]
    },
    {
      "page": "correct_peak_sd_height",
      "title": "correct peak height and sd",
      "topics": [
        "correct_peak_sd_height"
      ]
    },
    {
      "page": "correct_variance",
      "title": "correct peak variance",
      "topics": [
        "correct_variance"
      ]
    },
    {
      "page": "create_frequency_regions",
      "title": "create frequency regions",
      "topics": [
        "create_frequency_regions"
      ]
    },
    {
      "page": "create_value",
      "title": "create a value from mantissa and exponent",
      "topics": [
        "create_value"
      ]
    },
    {
      "page": "default_correct_offset_function",
      "title": "correct offsets",
      "topics": [
        "default_correct_offset_function"
      ]
    },
    {
      "page": "default_offset_predict_function",
      "title": "offset predict function",
      "topics": [
        "default_offset_predict_function"
      ]
    },
    {
      "page": "disable_logging",
      "title": "turn logging off",
      "topics": [
        "disable_logging"
      ]
    },
    {
      "page": "enable_logging",
      "title": "turn logging on",
      "topics": [
        "enable_logging"
      ]
    },
    {
      "page": "extract",
      "title": "extract parts of a value",
      "topics": [
        "extract"
      ]
    },
    {
      "page": "extract_raw_method",
      "title": "extract raw method",
      "topics": [
        "extract_raw_method"
      ]
    },
    {
      "page": "filter_scans_builtin",
      "title": "built in filter scan function",
      "topics": [
        "filter_scans_builtin"
      ]
    },
    {
      "page": "find_signal_regions",
      "title": "find signal",
      "topics": [
        "find_signal_regions"
      ]
    },
    {
      "page": "frequency_points_to_frequency_regions",
      "title": "frequency points to frequency_regions",
      "topics": [
        "frequency_points_to_frequency_regions"
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    },
    {
      "page": "get_fitted_peak_info",
      "title": "fitted peak information",
      "topics": [
        "get_fitted_peak_info"
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    },
    {
      "page": "get_mzml_header",
      "title": "extract mzML header",
      "topics": [
        "get_mzml_header"
      ]
    },
    {
      "page": "get_mzml_metadata",
      "title": "get mzML metadata",
      "topics": [
        "get_mzml_metadata"
      ]
    },
    {
      "page": "get_raw_ms_metadata",
      "title": "get raw ms metadata",
      "topics": [
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      "page": "import_json",
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    },
    {
      "page": "import_sc_mzml",
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      "topics": [
        "import_sc_mzml"
      ]
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    {
      "page": "indicate_standards_contaminents",
      "title": "indicate standards",
      "topics": [
        "indicate_standards_contaminents"
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    {
      "page": "initialize_metadata_from_mzml",
      "title": "initialize metadata from mzML",
      "topics": [
        "initialize_metadata_from_mzml"
      ]
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    {
      "page": "initialize_zip_metadata",
      "title": "initialize metadata",
      "topics": [
        "initialize_zip_metadata"
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    },
    {
      "page": "integrate_model",
      "title": "integrate model",
      "topics": [
        "integrate_model"
      ]
    },
    {
      "page": "integrate_sides",
      "title": "integrate sides",
      "topics": [
        "integrate_sides"
      ]
    },
    {
      "page": "integration_based_area",
      "title": "area from integration",
      "topics": [
        "integration_based_area"
      ]
    },
    {
      "page": "json_2_peak_list",
      "title": "PeakList from json",
      "topics": [
        "json_2_peak_list"
      ]
    },
    {
      "page": "json_mzML_2_df",
      "title": "json mzML to data.frame",
      "topics": [
        "json_mzML_2_df"
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    },
    {
      "page": "lists_2_json",
      "title": "lists_2_json",
      "topics": [
        "lists_2_json"
      ]
    },
    {
      "page": "load_metadata",
      "title": "load metadata",
      "topics": [
        "load_metadata"
      ]
    },
    {
      "page": "loess_to_df",
      "title": "create loess data.frame",
      "topics": [
        "loess_to_df"
      ]
    },
    {
      "page": "log_memory",
      "title": "log memory usage",
      "topics": [
        "log_memory"
      ]
    },
    {
      "page": "log_message",
      "title": "log messages",
      "topics": [
        "log_message"
      ]
    },
    {
      "page": "log_with_min",
      "title": "log-transform data",
      "topics": [
        "log_with_min"
      ]
    },
    {
      "page": "meta_export_json",
      "title": "export metadata to json",
      "topics": [
        "meta_export_json"
      ]
    },
    {
      "page": "model_peak_center_intensity",
      "title": "model peak center",
      "topics": [
        "model_peak_center_intensity"
      ]
    },
    {
      "page": "mz_frequency_interpolation",
      "title": "convert mz to frequency using linear fit",
      "topics": [
        "mz_frequency_interpolation"
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    },
    {
      "page": "mz_scans_to_frequency",
      "title": "convert mz to frequency across scans",
      "topics": [
        "mz_scans_to_frequency"
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    },
    {
      "page": "mzml_to_zip",
      "title": "create initial zip from mzML",
      "topics": [
        "mzml_to_zip"
      ]
    },
    {
      "page": "parabolic_fit",
      "title": "parabolic fit",
      "topics": [
        "parabolic_fit"
      ]
    },
    {
      "page": "peak_list_2_json",
      "title": "PeakList to json",
      "topics": [
        "peak_list_2_json"
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    },
    {
      "page": "predicted_frequency_r2",
      "title": "calculate r2",
      "topics": [
        "predicted_frequency_r2"
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    },
    {
      "page": "raw_metadata_mzml",
      "title": "get mzml metadata",
      "topics": [
        "raw_metadata_mzml"
      ]
    },
    {
      "page": "recalculate_offsets",
      "title": "recalculate offsets",
      "topics": [
        "recalculate_offsets"
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    },
    {
      "page": "run_mzml_list",
      "title": "run list of mzML files",
      "topics": [
        "run_mzml_list"
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    },
    {
      "page": "sample_run_time",
      "title": "determine sample run time",
      "topics": [
        "sample_run_time"
      ]
    },
    {
      "page": "sc_zip",
      "title": "make a new SCZip",
      "topics": [
        "sc_zip"
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    },
    {
      "page": "ScanCentricPeakCharacterization",
      "title": "ScanCentricPeakCharacterization: A package for direct injection FT-MS data processing.",
      "topics": [
        "ScanCentricPeakCharacterization"
      ]
    },
    {
      "page": "SCCharacterizePeaks",
      "title": "R6 Class Controlling Peak Characterization",
      "topics": [
        "SCCharacterizePeaks"
      ]
    },
    {
      "page": "SCMzml",
      "title": "R6 Class For mzML Data",
      "topics": [
        "SCMzml"
      ]
    },
    {
      "page": "SCPeakRegionFinder",
      "title": "R6 Peak Region Finder",
      "topics": [
        "SCPeakRegionFinder"
      ]
    },
    {
      "page": "SCPeakRegions",
      "title": "Holds all the peak region data",
      "topics": [
        "SCPeakRegions"
      ]
    },
    {
      "page": "SCZip",
      "title": "Represents the zip mass spec file",
      "topics": [
        "SCZip"
      ]
    },
    {
      "page": "set_internal_map",
      "title": "pick mapping function",
      "topics": [
        "set_internal_map"
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    },
    {
      "page": "show_progress",
      "title": "turn progress on off",
      "topics": [
        "show_progress"
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    },
    {
      "page": "single_pass_normalization",
      "title": "Single Pass Normalization",
      "topics": [
        "single_pass_normalization"
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    },
    {
      "page": "split_region_by_peaks",
      "title": "split signal region",
      "topics": [
        "split_region_by_peaks"
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      "page": "ssr",
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      "topics": [
        "ssr"
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    {
      "page": "transform_residuals",
      "title": "transformed residuals",
      "topics": [
        "transform_residuals"
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    },
    {
      "page": "zip_list_contents",
      "title": "list zip file contents",
      "topics": [
        "zip_list_contents"
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