{
  "_id": "6ad1cc1d29625c14e47ae8b0",
  "Package": "categoryCompare2",
  "Version": "0.200.9",
  "Title": "Meta-Analysis of High-Throughput Experiments Using Feature\nAnnotations",
  "Authors@R": "c(\nperson(\ngiven = c(\"Robert\", \"M\"),\nfamily = \"Flight\",\nrole = c(\"aut\", \"cre\"),\nemail = \"rflight79@gmail.com\",\ncomment = c(ORCID = \"0000-0001-8141-7788\")),\nperson(\ngiven = c(\"Hunter\", \"NB\"),\nfamily = \"Moseley\",\nrole = c(\"aut\"),\nemail = \"hunter.moseley@gmail.com\",\ncomment = c(ORCID = \"0000-0003-3995-5368\")\n),\nperson(\ngiven = c(\"Erik\", \"D\"),\nfamily = \"Huckvale\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-6994-8831\")),\nperson(\ngiven = c(\"Eugene\", \"W\"),\nfamily = \"Hinderer\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-8045-7083\")\n))",
  "URL": "https://github.com/MoseleyBioinformaticsLab/categoryCompare2,\nhttps://moseleybioinformaticslab.github.io/categoryCompare2",
  "BugReports": "https://github.com/MoseleyBioinformaticsLab/categoryCompare2/issues",
  "License": "MIT + file LICENSE",
  "LazyLoad": "yes",
  "Description": "Facilitates comparison of significant annotations\n(categories) generated on one or more feature lists.\nInteractive exploration is facilitated through the use of\nRCytoscape (heavily suggested).",
  "SystemRequirements": "Cytoscape (>= 3.0) (if used for visualization of\nresults, heavily suggested)",
  "biocViews": "Annotation, GO, MultipleComparison, Pathways, GeneExpression",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libglpk-dev libpng-dev libxml2-dev libssl-dev\nzlib1g-dev",
  "Repository": "https://moseleybioinformaticslab.r-universe.dev",
  "Date/Publication": "2026-05-04 20:02:31 UTC",
  "RemoteUrl": "https://github.com/MoseleyBioinformaticsLab/categoryCompare2",
  "RemoteRef": "v0.200.9",
  "RemoteSha": "6b39c9214a62339f3f71378bdd66c4784517b007",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-16 06:45:20 UTC",
    "User": "root"
  },
  "Author": "Robert M Flight [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-8141-7788>),\nHunter NB Moseley [aut] (ORCID:\n<https://orcid.org/0000-0003-3995-5368>),\nErik D Huckvale [aut] (ORCID: <https://orcid.org/0000-0002-6994-8831>),\nEugene W Hinderer [aut] (ORCID:\n<https://orcid.org/0000-0001-8045-7083>)",
  "Maintainer": "Robert M Flight <rflight79@gmail.com>",
  "_user": "moseleybioinformaticslab",
  "_type": "src",
  "_file": "categoryCompare2_0.200.9.tar.gz",
  "_fileid": "https://r2.ropensci.org/8a58fdf4f2f35aba6b9b94aec12b8bf9e32b6a019c5bd02f9fc5b047da48df2f",
  "_filesize": 32055811,
  "_sha256": "8a58fdf4f2f35aba6b9b94aec12b8bf9e32b6a019c5bd02f9fc5b047da48df2f",
  "_expires": "2027-01-24T07:02:50.000Z",
  "_created": "2026-10-16T06:45:20.000Z",
  "_published": "2026-10-16T07:02:53.399Z",
  "_buildurl": "https://github.com/r-universe/moseleybioinformaticslab/actions/runs/38861944587",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 116849633185,
      "time": 410,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12030506024"
    },
    {
      "job": 116849633359,
      "time": 428,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12030600676"
    },
    {
      "job": 116849633250,
      "time": 549,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12030003804"
    },
    {
      "job": 116849633310,
      "time": 410,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12030289850"
    },
    {
      "job": 116846102407,
      "time": 700,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12029304806"
    },
    {
      "job": 116849633174,
      "time": 190,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12030406257"
    },
    {
      "job": 116849633260,
      "time": 347,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12030168443"
    },
    {
      "job": 116849633204,
      "time": 386,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12030447574"
    },
    {
      "job": 116849633282,
      "time": 568,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12030770099"
    }
  ],
  "_upstream": "https://github.com/MoseleyBioinformaticsLab/categoryCompare2",
  "_commit": {
    "id": "6b39c9214a62339f3f71378bdd66c4784517b007",
    "author": "rmflight <r.flight79@gmail.com>",
    "committer": "rmflight <r.flight79@gmail.com>",
    "message": "update version across docs\n",
    "time": 1777924951
  },
  "_maintainer": {
    "name": "Robert M Flight",
    "email": "rflight79@gmail.com",
    "login": "rflight79",
    "description": "",
    "uuid": 1399493,
    "orcid": "0000-0001-8141-7788"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "AnnotationDbi",
      "role": "Imports"
    },
    {
      "package": "colorspace",
      "role": "Imports"
    },
    {
      "package": "graph",
      "role": "Imports"
    },
    {
      "package": "igraph",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "base64enc",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "GO.db",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    },
    {
      "package": "estrogen",
      "role": "Suggests"
    },
    {
      "package": "org.Hs.eg.db",
      "role": "Suggests"
    },
    {
      "package": "hgu95av2.db",
      "role": "Suggests"
    },
    {
      "package": "limma",
      "role": "Suggests"
    },
    {
      "package": "affy",
      "role": "Suggests"
    },
    {
      "package": "genefilter",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "visNetwork",
      "role": "Suggests"
    },
    {
      "package": "ragg",
      "role": "Suggests"
    },
    {
      "package": "DiagrammeR",
      "role": "Suggests"
    },
    {
      "package": "KEGGREST",
      "role": "Suggests"
    },
    {
      "package": "docopt",
      "version": ">= 0.7.0",
      "role": "Suggests"
    },
    {
      "package": "RCy3",
      "role": "Suggests"
    },
    {
      "package": "hgu95av2cdf",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "fgsea",
      "role": "Suggests"
    },
    {
      "package": "data.table",
      "role": "Suggests"
    },
    {
      "package": "withr",
      "role": "Suggests"
    }
  ],
  "_owner": "moseleybioinformaticslab",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-06",
      "n": 1
    },
    {
      "week": "2026-08",
      "n": 1
    },
    {
      "week": "2026-15",
      "n": 1
    },
    {
      "week": "2026-17",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 8
    },
    {
      "week": "2026-19",
      "n": 6
    }
  ],
  "_tags": [
    {
      "name": "v0.200.7",
      "date": "2026-04-27"
    },
    {
      "name": "v0.200.8",
      "date": "2026-05-01"
    },
    {
      "name": "v0.200.9",
      "date": "2026-05-04"
    }
  ],
  "_topics": [
    "annotation",
    "go",
    "multiplecomparison",
    "pathways",
    "geneexpression",
    "bioconductor",
    "bioinformatics",
    "gene-annotation",
    "gene-expression",
    "gene-sets"
  ],
  "_stars": 2,
  "_contributors": [
    {
      "user": "rmflight",
      "count": 456,
      "uuid": 1509626
    },
    {
      "user": "rflight79",
      "count": 2,
      "uuid": 1399493
    }
  ],
  "_userbio": {
    "uuid": 20784399,
    "type": "organization",
    "name": "Moseley Bioinformatics and Systems Biology Lab",
    "followers": 20,
    "description": "We develop and maintain a set of high-quality, well-documented, open source code repositories for general scientific re-use."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/categoryCompare2"
  },
  "_devurl": "https://github.com/moseleybioinformaticslab/categorycompare2",
  "_pkgdown": "https://moseleybioinformaticslab.github.io/categoryCompare2",
  "_searchresults": 11,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/categoryCompare2.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "annotation",
    "annotation_2_json",
    "annotation_combinations",
    "annotation_gene_table",
    "assign_colors",
    "assign_communities",
    "binomial_basic",
    "binomial_feature_enrichment",
    "binomial_features",
    "cc_graph",
    "combine_annotation_features",
    "combine_annotations",
    "combine_enrichments",
    "combine_text",
    "combined_coefficient",
    "combined_enrichment",
    "combined_significant_calls",
    "combined_statistics",
    "csv_annotation_table",
    "executable_path",
    "extract_enrich_stats",
    "extract_statistics",
    "filter_annotation_graph",
    "generate_annotation_graph",
    "generate_annotation_similarity_graph",
    "generate_colors",
    "generate_legend",
    "generate_link",
    "generate_piecharts",
    "generate_table",
    "get_db_annotation",
    "get_significant_annotations",
    "get_significant_annotations_calls",
    "gocats_to_annotation",
    "graph_to_visnetwork",
    "gsea_feature_enrichment",
    "gsea_features",
    "gsea_result_to_fgsea",
    "hypergeometric_basic",
    "hypergeometric_feature_enrichment",
    "hypergeometric_features",
    "hypergeometric_result",
    "install_executables",
    "jaccard_coefficient",
    "json_2_annotation",
    "json_annotation_reversal",
    "kable_annotation_table",
    "label_communities",
    "multi_query_list",
    "node_assign",
    "overlap_coefficient",
    "remove_edges",
    "show",
    "significant_annotations",
    "statistical_results",
    "table_from_graph",
    "vis_in_cytoscape",
    "vis_visnetwork"
  ],
  "_help": [
    {
      "page": "add_data_to_graph",
      "title": "add table data to graph",
      "topics": [
        "add_data_to_graph"
      ]
    },
    {
      "page": "add_tooltip",
      "title": "add tooltip",
      "topics": [
        "add_tooltip"
      ]
    },
    {
      "page": "annotation",
      "title": "annotation class",
      "topics": [
        "annotation",
        "show,annotation-method"
      ]
    },
    {
      "page": "annotation_2_json",
      "title": "annotation to json",
      "topics": [
        "annotation_2_json"
      ]
    },
    {
      "page": "annotation_combinations",
      "title": "unique annotation combinations",
      "topics": [
        "annotation_combinations",
        "annotation_combinations,cc_graph-method",
        "annotation_combinations,significant_annotations-method"
      ]
    },
    {
      "page": "annotation_gene_table",
      "title": "annotation to genes",
      "topics": [
        "annotation_gene_table"
      ]
    },
    {
      "page": "assign_colors",
      "title": "assign colors",
      "topics": [
        "assign_colors"
      ]
    },
    {
      "page": "assign_communities",
      "title": "assign communities",
      "topics": [
        "assign_communities"
      ]
    },
    {
      "page": "binomial_basic",
      "title": "do binomial test",
      "topics": [
        "binomial_basic"
      ]
    },
    {
      "page": "binomial_feature_enrichment",
      "title": "do binomial testing",
      "topics": [
        "binomial_feature_enrichment"
      ]
    },
    {
      "page": "binomial_features",
      "title": "binomial_features constructor",
      "topics": [
        "binomial_features"
      ]
    },
    {
      "page": "binomial_features-class",
      "title": "binomial feature class",
      "topics": [
        "binomial_features-class"
      ]
    },
    {
      "page": "categoryCompare2",
      "title": "categoryCompare2: A package for comparing enrichment results from multiple experiments",
      "topics": [
        "categoryCompare2"
      ]
    },
    {
      "page": "cc_graph",
      "title": "cc_graph",
      "topics": [
        "cc_graph",
        "show,cc_graph-method"
      ]
    },
    {
      "page": "combine_annotation_features",
      "title": "combine annotation-features",
      "topics": [
        "combine_annotation_features"
      ]
    },
    {
      "page": "combine_annotations",
      "title": "combine annotations",
      "topics": [
        "combine_annotations",
        "combine_annotations,list-method"
      ]
    },
    {
      "page": "combine_enrichments",
      "title": "combine enrichments",
      "topics": [
        "combine_enrichments",
        "combine_enrichments,enriched_result-method",
        "combine_enrichments,list-method"
      ]
    },
    {
      "page": "combine_text",
      "title": "combine text",
      "topics": [
        "combine_text"
      ]
    },
    {
      "page": "combined_coefficient",
      "title": "combined coefficient",
      "topics": [
        "combined_coefficient"
      ]
    },
    {
      "page": "combined_enrichment",
      "title": "combined enrichments",
      "topics": [
        "combined_enrichment",
        "combined_enrichment-class"
      ]
    },
    {
      "page": "combined_significant_calls",
      "title": "get significant annotations calls",
      "topics": [
        "combined_significant_calls"
      ]
    },
    {
      "page": "combined_statistics",
      "title": "combined statistics",
      "topics": [
        "combined_statistics"
      ]
    },
    {
      "page": "csv_annotation_table",
      "title": "print table csv",
      "topics": [
        "csv_annotation_table"
      ]
    },
    {
      "page": "enriched_result",
      "title": "the enriched results class",
      "topics": [
        "binomial_result",
        "binomial_result-class",
        "enriched_result",
        "enriched_result-class",
        "gsea_result",
        "gsea_result-class",
        "hypergeometric_result",
        "hypergeometric_result-class",
        "show,binomial_result-method",
        "show,enriched_result-method"
      ]
    },
    {
      "page": "executable_path",
      "title": "executable path",
      "topics": [
        "executable_path"
      ]
    },
    {
      "page": "extract_enrich_stats",
      "title": "extract enrich stats",
      "topics": [
        "extract_enrich_stats"
      ]
    },
    {
      "page": "extract_statistics",
      "title": "get statistics",
      "topics": [
        "extract_statistics",
        "extract_statistics,statistical_results-method"
      ]
    },
    {
      "page": "extract_statistics-combined_enrichment-method",
      "title": "extract statistics",
      "topics": [
        "extract_statistics,combined_enrichment-method"
      ]
    },
    {
      "page": "extract_statistics-enriched_result-method",
      "title": "extract statistics",
      "topics": [
        "extract_statistics,enriched_result-method"
      ]
    },
    {
      "page": "filter_annotation_graph",
      "title": "filter graph by significant entries",
      "topics": [
        "filter_annotation_graph"
      ]
    },
    {
      "page": "generate_annotation_graph",
      "title": "generate annotation graph",
      "topics": [
        "generate_annotation_graph",
        "generate_annotation_graph,combined_enrichment-method"
      ]
    },
    {
      "page": "generate_annotation_similarity_graph",
      "title": "annotation similarity graph",
      "topics": [
        "generate_annotation_similarity_graph"
      ]
    },
    {
      "page": "generate_colors",
      "title": "generate colors",
      "topics": [
        "generate_colors"
      ]
    },
    {
      "page": "generate_legend",
      "title": "generate a legend",
      "topics": [
        "generate_legend"
      ]
    },
    {
      "page": "generate_link",
      "title": "generate link text",
      "topics": [
        "generate_link"
      ]
    },
    {
      "page": "generate_piecharts",
      "title": "create piecharts for visualization",
      "topics": [
        "generate_piecharts"
      ]
    },
    {
      "page": "generate_table",
      "title": "generate statistical table",
      "topics": [
        "generate_table",
        "generate_table,combined_enrichment-method"
      ]
    },
    {
      "page": "get_db_annotation",
      "title": "orgdb annotations",
      "topics": [
        "get_db_annotation"
      ]
    },
    {
      "page": "get_significant_annotations",
      "title": "get significant annotations",
      "topics": [
        "get_significant_annotations",
        "get_significant_annotations,combined_enrichment-method",
        "get_significant_annotations,statistical_results-method"
      ]
    },
    {
      "page": "get_significant_annotations_calls",
      "title": "get significant annotations calls",
      "topics": [
        "get_significant_annotations_calls"
      ]
    },
    {
      "page": "gocats_to_annotation",
      "title": "gocats to annnotations",
      "topics": [
        "gocats_to_annotation"
      ]
    },
    {
      "page": "graph_to_visnetwork",
      "title": "cc_graph to visnetwork",
      "topics": [
        "graph_to_visnetwork"
      ]
    },
    {
      "page": "gsea_feature_enrichment",
      "title": "do GSEA",
      "topics": [
        "gsea_feature_enrichment"
      ]
    },
    {
      "page": "gsea_features",
      "title": "gsea_features constructor",
      "topics": [
        "gsea_features"
      ]
    },
    {
      "page": "gsea_features-class",
      "title": "GSEA feature class",
      "topics": [
        "gsea_features-class"
      ]
    },
    {
      "page": "gsea_result_to_fgsea",
      "title": "convert gsea object",
      "topics": [
        "gsea_result_to_fgsea"
      ]
    },
    {
      "page": "hypergeometric_basic",
      "title": "do hypergeometric test",
      "topics": [
        "hypergeometric_basic"
      ]
    },
    {
      "page": "hypergeometric_feature_enrichment",
      "title": "do hypergeometric enrichment",
      "topics": [
        "hypergeometric_feature_enrichment"
      ]
    },
    {
      "page": "hypergeometric_features",
      "title": "hypergeometric_features constructor",
      "topics": [
        "hypergeometric_features"
      ]
    },
    {
      "page": "hypergeometric_features-class",
      "title": "hypergeometric feature class",
      "topics": [
        "hypergeometric_features-class"
      ]
    },
    {
      "page": "install_executables",
      "title": "install executables",
      "topics": [
        "install_executables"
      ]
    },
    {
      "page": "jaccard_coefficient",
      "title": "jaccard coefficient",
      "topics": [
        "jaccard_coefficient"
      ]
    },
    {
      "page": "json_2_annotation",
      "title": "json to annotation",
      "topics": [
        "json_2_annotation"
      ]
    },
    {
      "page": "json_annotation_reversal",
      "title": "annotation reversal",
      "topics": [
        "json_annotation_reversal"
      ]
    },
    {
      "page": "kable_annotation_table",
      "title": "print table kable",
      "topics": [
        "kable_annotation_table"
      ]
    },
    {
      "page": "label_communities",
      "title": "label communities",
      "topics": [
        "label_communities"
      ]
    },
    {
      "page": "multi_query_list",
      "title": "index a list",
      "topics": [
        "multi_query_list"
      ]
    },
    {
      "page": "node_assign-class",
      "title": "node_assign",
      "topics": [
        "node_assign",
        "node_assign-class"
      ]
    },
    {
      "page": "overlap_coefficient",
      "title": "overlap coefficient",
      "topics": [
        "overlap_coefficient"
      ]
    },
    {
      "page": "remove_edges",
      "title": "remove edges",
      "topics": [
        "remove_edges",
        "remove_edges,cc_graph,numeric-method",
        "remove_edges,character,numeric-method"
      ]
    },
    {
      "page": "show-combined_statistics-method",
      "title": "show combined_statistics",
      "topics": [
        "show,combined_statistics-method"
      ]
    },
    {
      "page": "show-node_assign-method",
      "title": "show node_assign",
      "topics": [
        "show,node_assign-method"
      ]
    },
    {
      "page": "show-significant_annotations-method",
      "title": "show signficant_annotations",
      "topics": [
        "show,significant_annotations-method"
      ]
    },
    {
      "page": "significant_annotations",
      "title": "significant annotations",
      "topics": [
        "significant_annotations"
      ]
    },
    {
      "page": "statistical_results-class",
      "title": "statistical results class",
      "topics": [
        "statistical_results",
        "statistical_results-class"
      ]
    },
    {
      "page": "table_from_graph",
      "title": "table from graph",
      "topics": [
        "table_from_graph"
      ]
    },
    {
      "page": "vis_in_cytoscape",
      "title": "visualize in cytoscape",
      "topics": [
        "vis_in_cytoscape"
      ]
    },
    {
      "page": "vis_visnetwork",
      "title": "vis in visNetwork",
      "topics": [
        "vis_visnetwork"
      ]
    }
  ],
  "_readme": "https://github.com/MoseleyBioinformaticsLab/categoryCompare2/raw/v0.200.9/README.md",
  "_rundeps": [
    "AnnotationDbi",
    "askpass",
    "base64enc",
    "Biobase",
    "BiocBaseUtils",
    "BiocGenerics",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "colorspace",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dplyr",
    "fastmap",
    "generics",
    "glue",
    "GO.db",
    "graph",
    "httr",
    "igraph",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "memoise",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "purrr",
    "R6",
    "rlang",
    "RSQLite",
    "S4Vectors",
    "Seqinfo",
    "sys",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "v2_guide.Rmd",
      "filename": "v2_guide.html",
      "title": "categoryCompare: High-throughput data meta-analysis using gene annotations, V2",
      "author": "Robert M Flight",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Sample Data",
        "Create Gene List",
        "Create GO Annotation Object",
        "Do Enrichment",
        "Combine and Find Significant",
        "Generate Graph",
        "Find Communities",
        "Cytoscape Visualization"
      ],
      "created": "2024-05-02 23:10:38",
      "modified": "2026-05-04 18:39:51",
      "commits": 5
    },
    {
      "source": "command_line_interface.Rmd",
      "filename": "command_line_interface.html",
      "title": "categoryCompare2: Command Line Interface",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "Hypergeometric Enrichment",
        "Inputs",
        "Running",
        "Annotations",
        "Features",
        "Running Enrichments",
        "Text Only FALSE",
        "Filter and Group Annotations",
        "Example Input File Structure",
        "Gene Set Enrichment Analysis (GSEA)"
      ],
      "created": "2023-06-07 17:14:06",
      "modified": "2025-06-30 20:24:41",
      "commits": 8
    },
    {
      "source": "v2_visnetwork_guide.Rmd",
      "filename": "v2_visnetwork_guide.html",
      "title": "categoryCompare2: visNetwork",
      "engine": "knitr::rmarkdown",
      "headings": [
        "categoryCompare2: Alternative Visualization",
        "Introduction",
        "Sample Data",
        "Create Gene List",
        "Create GO Annotation Object",
        "Do Enrichment",
        "Combine and Find Significant",
        "Generate Graph",
        "visNetwork Visualization",
        "Find Communities",
        "Create Stats Table",
        "Actually Visualize It!"
      ],
      "created": "2024-05-02 23:10:38",
      "modified": "2026-05-04 18:39:51",
      "commits": 5
    },
    {
      "source": "gsea.Rmd",
      "filename": "gsea.html",
      "title": "Gene Set Enrichment Analysis",
      "author": "Robert M Flight",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Sample Data",
        "Create Annotations and Enrich",
        "Combine and Find Significant",
        "Generate Graph",
        "Find Communities",
        "Visualize It"
      ],
      "created": "2024-10-31 18:13:17",
      "modified": "2026-05-04 18:39:51",
      "commits": 3
    }
  ],
  "_score": 4.421603926869832,
  "_indexed": true,
  "_nocasepkg": "categorycompare2",
  "_universes": [
    "moseleybioinformaticslab",
    "rflight79"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.200.9",
      "date": "2026-10-16T06:48:51.000Z",
      "distro": "resolute",
      "commit": "6b39c9214a62339f3f71378bdd66c4784517b007",
      "fileid": "https://r2.ropensci.org/c94371c9ca7e7cc25510e7bd1b01f9169f7f6ad5a57b9bd7c8ad32486723d8da",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/moseleybioinformaticslab/actions/runs/38861944587"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.200.9",
      "date": "2026-10-16T06:49:41.000Z",
      "distro": "resolute",
      "commit": "6b39c9214a62339f3f71378bdd66c4784517b007",
      "fileid": "https://r2.ropensci.org/3ad6c9fe44893f645210a154bdcd090c79db46f025308ef0c531a28a9be4aabd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/moseleybioinformaticslab/actions/runs/38861944587"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.200.9",
      "date": "2026-10-16T06:55:33.000Z",
      "commit": "6b39c9214a62339f3f71378bdd66c4784517b007",
      "fileid": "https://r2.ropensci.org/8dabc4bfde68812ea9c50e45378a782e9bc25a7db97518a7e0fdd6ad3da3a3ae",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/moseleybioinformaticslab/actions/runs/38861944587"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.200.9",
      "date": "2026-10-16T06:56:12.000Z",
      "commit": "6b39c9214a62339f3f71378bdd66c4784517b007",
      "fileid": "https://r2.ropensci.org/47af5a564d13e09a00836ccb4ab2e8554706fd4bf8001ee45a650a013da41e9f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/moseleybioinformaticslab/actions/runs/38861944587"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.200.9",
      "date": "2026-10-16T06:49:16.000Z",
      "commit": "6b39c9214a62339f3f71378bdd66c4784517b007",
      "fileid": "https://r2.ropensci.org/61361e77b2f6f4e7028b4ac7d1844e0efd6d45c3d74e13e0fd145baa6a9c7ba3",
      "status": "success",
      "buildurl": "https://github.com/r-universe/moseleybioinformaticslab/actions/runs/38861944587"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.200.9",
      "date": "2026-10-16T06:47:57.000Z",
      "commit": "6b39c9214a62339f3f71378bdd66c4784517b007",
      "fileid": "https://r2.ropensci.org/30093f7e52406b5d018f1cc98aec7fc592561a38e3482fb3094be6aba3685f5c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/moseleybioinformaticslab/actions/runs/38861944587"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.200.9",
      "date": "2026-10-16T06:47:48.000Z",
      "commit": "6b39c9214a62339f3f71378bdd66c4784517b007",
      "fileid": "https://r2.ropensci.org/53f773753f3c88d66a3109710f8b169304bd159e824f5caba9a869e2a324c2c9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/moseleybioinformaticslab/actions/runs/38861944587"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.200.9",
      "date": "2026-10-16T06:49:40.000Z",
      "commit": "6b39c9214a62339f3f71378bdd66c4784517b007",
      "fileid": "https://r2.ropensci.org/be24f68c40bfc77d7a895bf2ede68316ae6a3141e81d99ba47515678ba332c07",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/moseleybioinformaticslab/actions/runs/38861944587"
    }
  ]
}