Package: categoryCompare2
Version: 0.200.9
Title: Meta-Analysis of High-Throughput Experiments Using Feature
        Annotations
Authors@R: c(
      person(
                given = c("Robert", "M"), 
                family = "Flight", 
                role = c("aut", "cre"), 
                email = "rflight79@gmail.com", 
                comment = c(ORCID = "0000-0001-8141-7788")),
      person(
                given = c("Hunter", "NB"),
                family = "Moseley",
                role = c("aut"),
                email = "hunter.moseley@gmail.com",
                comment = c(ORCID = "0000-0003-3995-5368")
        ),
        person(
                given = c("Erik", "D"),
                family = "Huckvale",
                role = c("aut"),
                comment = c(ORCID = "0000-0002-6994-8831")),
        person(
                given = c("Eugene", "W"),
                family = "Hinderer",
                role = c("aut"),
                comment = c(ORCID = "0000-0001-8045-7083")
        ))
URL: https://github.com/MoseleyBioinformaticsLab/categoryCompare2,
        https://moseleybioinformaticslab.github.io/categoryCompare2
BugReports: https://github.com/MoseleyBioinformaticsLab/categoryCompare2/issues
License: MIT + file LICENSE
Depends: R (>= 4.1.0)
Suggests: knitr, markdown, estrogen, org.Hs.eg.db, hgu95av2.db, limma,
        affy, genefilter, testthat (>= 3.0.0), visNetwork, ragg,
        DiagrammeR, KEGGREST, docopt (>= 0.7.0), RCy3, hgu95av2cdf,
        rmarkdown, fgsea, data.table, withr
Imports: Biobase, methods, AnnotationDbi, colorspace, graph, igraph,
        jsonlite, base64enc, dplyr, purrr, rlang, GO.db, stats
LazyLoad: yes
Description: Facilitates comparison of significant annotations
        (categories) generated on one or more feature lists.
        Interactive exploration is facilitated through the use of
        RCytoscape (heavily suggested).
SystemRequirements: Cytoscape (>= 3.0) (if used for visualization of
        results, heavily suggested)
biocViews: Annotation, GO, MultipleComparison, Pathways, GeneExpression
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.3
Config/testthat/edition: 3
Config/pak/sysreqs: libglpk-dev libpng-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://moseleybioinformaticslab.r-universe.dev
Date/Publication: 2026-05-04 20:02:31 UTC
RemoteUrl: https://github.com/MoseleyBioinformaticsLab/categoryCompare2
RemoteRef: v0.200.9
RemoteSha: 6b39c9214a62339f3f71378bdd66c4784517b007
NeedsCompilation: no
Packaged: 2026-07-04 05:43:40 UTC; root
Author: Robert M Flight [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8141-7788>),
  Hunter NB Moseley [aut] (ORCID:
    <https://orcid.org/0000-0003-3995-5368>),
  Erik D Huckvale [aut] (ORCID: <https://orcid.org/0000-0002-6994-8831>),
  Eugene W Hinderer [aut] (ORCID:
    <https://orcid.org/0000-0001-8045-7083>)
Maintainer: Robert M Flight <rflight79@gmail.com>