Why? | Strategy | Fake Data | Add Missingness | Test | RNA-Seq Example
Package: ICIKendallTau 1.2.21
Robert M Flight
ICIKendallTau: Calculates information-content-informed Kendall-tau
Provides functions for calculating information-content-informed Kendall-tau. This version of Kendall-tau allows for the inclusion of missing values.
Authors:
ICIKendallTau_1.2.21.tar.gz
ICIKendallTau_1.2.21.zip(r-4.7)ICIKendallTau_1.2.21.zip(r-4.6)ICIKendallTau_1.2.21.zip(r-4.5)
ICIKendallTau_1.2.21.tgz(r-4.6-x86_64)ICIKendallTau_1.2.21.tgz(r-4.6-arm64)ICIKendallTau_1.2.21.tgz(r-4.5-x86_64)ICIKendallTau_1.2.21.tgz(r-4.5-arm64)
ICIKendallTau_1.2.21.tar.gz(r-4.7-arm64)ICIKendallTau_1.2.21.tar.gz(r-4.7-x86_64)ICIKendallTau_1.2.21.tar.gz(r-4.6-arm64)ICIKendallTau_1.2.21.tar.gz(r-4.6-x86_64)
ICIKendallTau_1.2.21.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ICIKendallTau/json (API)
| # Install 'ICIKendallTau' in R: |
| install.packages('ICIKendallTau', repos = c('https://moseleybioinformaticslab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/moseleybioinformaticslab/icikendalltau/issues
Pkgdown/docs site:https://moseleybioinformaticslab.github.io
Datasets:
- missing_dataset - Example Dataset With Missingness
- yeast_missing - Example RNA-Seq Dataset With Missingness
Last updated from:366796a7a0 (on v1.2.21). Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 165 | ||
| linux-devel-x86_64 | OK | 153 | ||
| source / vignettes | OK | 219 | ||
| linux-release-arm64 | OK | 195 | ||
| linux-release-x86_64 | OK | 158 | ||
| macos-release-arm64 | OK | 113 | ||
| macos-release-x86_64 | OK | 211 | ||
| macos-oldrel-arm64 | OK | 113 | ||
| macos-oldrel-x86_64 | OK | 173 | ||
| windows-devel | OK | 108 | ||
| windows-release | OK | 122 | ||
| windows-oldrel | OK | 130 | ||
| wasm-release | OK | 153 |
Exports:add_uniform_noisecalculate_matrix_medianscor_fastcor_matrix_2_long_dfdisable_loggingenable_loggingici_kendalltauici_ktkt_fastlog_memorylog_messagelong_df_2_cor_matrixpairwise_completenessrank_order_datashow_progresstest_left_censorship
Dependencies:cligluelifecyclemagrittrpurrrRcpprlangstringistringrvctrs
Testing for Left Censorship
Last update: 2024-04-12
Started: 2024-04-10
Information-Content-Informed Kendall Tau Correlation
Problem | Approach | Handling Tied Values | Scaling by the correlation with the highest information content | Functions | Implementation | Speed | Running Many | Parallelism | Many Many Comparisons | Logging
Last update: 2024-04-10
Started: 2021-05-21
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Add uniform noise | add_uniform_noise |
| Calculate matrix medians | calculate_matrix_medians |
| Fast correlation with test | cor_fast |
| convert matrix to data.frame | cor_matrix_2_long_df |
| turn logging off | disable_logging |
| turn logging on | enable_logging |
| Information-content-informed kendall tau | ici_kendalltau |
| Calculates ici-kendall-tau | ici_kt |
| Fast kendall tau | kt_fast |
| log memory usage | log_memory |
| log messages | log_message |
| convert data.frame to matrix | long_df_2_cor_matrix |
| Example Dataset With Missingness | missing_dataset |
| pairwise completeness | pairwise_completeness |
| Rank order row data | rank_order_data |
| turn progress on off | show_progress |
| Test for left censorship | test_left_censorship |
| Example RNA-Seq Dataset With Missingness | yeast_missing |
